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Alabama A&M Interns Access An Abundance of Knowledge
In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship program to … Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … workshops and networked with fellow interns and scientists alike. Want to learn more about their experience? Watch the …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences … between the structures and functions of the genes encoded in the genome sequence is part of the integrative … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … we head there for a sense of what this supercomputing looks like. …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex … to analyze their structure. Scientists found both a gene likely important for sex determination and a shared genetic … called Z and W instead of X and Y, and ZW rather than ZZ encodes for females. To better understand how sex …
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Igor Grigoriev
DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse … al. Formation of mushrooms and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … finally resorting to explosives to succeed. Altiarchaea, like the Hornburg, have a history of countering multiple … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG …
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NeLLi — Symposium on New Lineages of Life
… “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular … Program Tanja Woyke, Microbial Program Robert Bowers,  User Project Coordination Rekha Seshadri,  Functional Annotation …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, … keeps its DNA more organized. “The big surprise of the project was to realize that these genome copies that are …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … do you not know in which direction the enzyme these genes encode are used — so producing methane or consuming methane, … “These new groups were discovered not by cultivation, like the original methanogens were, but they were discovered …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to … A., Hadjithomas M., Varghese N. J., Paez-Espino D., Hungate project, collaborators Perry R., Henderson G., Creevey C. …
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