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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … Alliance of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for this … of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the …
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Large Direct Repeats Flank Genomic Rearrangements between a New Clinical Isolate of Francisella tularensis subsp. tularensis A1 and Schu S4
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FICUS
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped … was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the 12,063 metagenomes) and reduce it into two axes (LDA …
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Natural Prodcast Episode 16: Marcy Balunas
… so there are– I hesitate to make a guess but maybe 50 to 100 different strains and they are in individual tubules.  … in the field, these glacial bacteria grow slow and it’s not 100% clear that we know what their biological activities … call this the needle in the Haystack. Because if we have 10,000 features which one do we look at because we are a …
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Trent Northen
… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An …
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Picking Up Threads of Cotton Genomics
… out of the green pods in every direction. There are 100 million families around the world whose livelihoods … lineages. Senior authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and … these things take not five or eight years, but sometimes 10 or 15 years, because the technology develops over time.” …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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User Executive Committee Charter
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… look at more ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of … resources of the JGI, NERSC and ExaBiome teams. Part 1: Many, Many Mers — While biologists were out sampling Lake …
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