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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, … eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it … an array of defense mechanisms. The Impact There are over 10,400 species of ferns alive today. Boasting adaptations in … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … first started out the natural product community was almost 100% bacterial. Only people working in mycotoxins worked … them?    NANCY:  Yeah, okay. Of course. Fungi have a larger genome. The genetics was slower to begin with. So …
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Workforce Development & Education Outreach
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a … Basepairs — A Vision for Integrative and Collaborative Genome Science , the culmination of an eight-month intensive … Maxon, Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI …
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Year in Review: JGI’s 2018 Progress Report Available Now
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … algorithms, allowing them to reconstruct more near-complete genomes from soil metagenomes compared to other methods. The …
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The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
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