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… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types …

… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …

… Maize produces a family of compounds that protects it against infections — using … including acting as antibiotics. But zealexins are almost completely limited to maize. By deciphering the zealexin … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …

… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … range since 2014 to learn more about the microbial responses and feedbacks to warming through the whole soil …

… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … - Architecture Blueprint Activity, the BERAC response to the charge on unified data, and the ASCR Future …

… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based techniques, the platform delivers rich … A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. …

… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … means using proteins on its tail fibers to latch onto a specific target on the microbial cell’s membrane. Two … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …

… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …

… JGI and the Workforce Development & Education department of Lawrence Berkeley National Laboratory (Berkeley Lab) … were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for the … Metabolomics Platform Blake Simmons for The BioManufactory Completed VFP applications are due on January 12, 2022. …