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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the …
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A User-Centered Approach to Accessing JGI Data
… Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Community Resource for Secondary Metabolite Researchers
… public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, it … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed … Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. …
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SPRUCE-ing Up Science
… like Minnesota for example, despite taking up only about 3% of the planet’s landmass, peat moss and their subsurface bogs hold over 30% of the world’s carbon. “This makes it one of the most … Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into …
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JGI on the 2020 Highly Cited Researchers List
… to help researchers assess and improve the quality of metagenome-assembled viral genomes. The paper appeared in  … consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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The fungus that made itself at home
… Summary Unlike white rots, brown rots break down only the cellulose and hemicellulose, leaving the lignin behind. The brown rot Serpula … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … predicted functional and metabolic roles across global metagenomes (within IMG).  The Impact The initial analysis … was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the 12,063 …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, I … because we have the resources as a user facility. The Metagenome Program team provided guidance and encouragement to … walked students through the processes of DNA sequencing, metagenome assembly, and even an introduction to data analysis …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … ecosystem works. When she set out to analyze 500 metagenomes from this sample set through the Community Science …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… drought condition, no water was given during weeks 3 to 8 before flowering. In the post-flowering period … and E.P.); Gordon and Betty Moore Foundation Grant GBMF3834 and Alfred P. Sloan Foundation Grant 2013-10-27 (to the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… All told, the disease has accounted for upwards of $30 billion in losses , including the death of tens of … the SODmap Mobile app enabled SOD Blitz participants to geotag specimens they collect. Later, those are annotated with … and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News …
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VEGA Symposium
… September 19, 2026) General & Berkeley Lab Attendee – $300 Students & Postdocs – $250   Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) symposium will take place … the goal of this symposium is to bring together a “Viral Ecogenomics” community to foster discussion on how to best …
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