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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  … Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also built a high-quality …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… inviting researchers to submit white papers to the CSP  New Investigator call for proposals.  Tips: Contact us with … allocation. Q: Can PhD candidates be considered for the CSP New Investigative Proposal? A: At most institutions, a PhD … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … researcher at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral sequences, which would …
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The JGI announces 2024 awardees for our Community Science Program annual call
… this call, as well as smaller-scale calls including our New Investigator and Functional Genomics calls, here on our …
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THE Bioenergy Tree
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Viruses Reprogram Cells into Different Virocells
… between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to MBD and MBS (#2582) and used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… more efficiently in the future, the evolutionary past may hold key insights. The way that plants process nutrients has … as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme …
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Chomping Toward Better Plastic Recycling
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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JGI@25: Building a Better Bean
… role in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close … of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … food in Central America and Eastern Africa. For smallholder farmers — those with less than two hectares of land — …
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