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Forest Fungi, Seagrass, and a New View of Symbiosis
… Three stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks …
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Mike Sneddon
… in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … that went public and was later acquired by Ginkgo Bioworks. Earlier in his career, he was a core software …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… for females. To better understand how sex determination works in shrub willow, researchers investigated the … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In … Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Summary geNomad is an annotation and classification framework that combines and builds on two standard techniques for …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Eelgrass Proves to Be Much Younger Than We Thought
… The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the … clock.  Various researchers around the globe were each working on their own genetic clock to discover when eelgrass …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user … to solve research problems. In Visel’s group, Olmstead worked with postdoctoral fellow Ben Cole on a project …
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JGIota: The Algae Nicknamed ‘Chlamy’
… This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s … Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other organisms – …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data … Mi Yan, Deanna Beatty)    Vision  Lead AI-driven genomic innovation to advance biotechnology. Mission  As a U.S. … Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, …
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