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What Happens Underground Influences Global Nutrient Cycles
… Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have generated a … their FICUS proposal include assessing the distribution of genome-derived functional traits through the soil profile …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a … carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Benjamin Cole
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … that precisely maps where transcription begins on the genome. This revealed a sweeping cellular response: The … The team also identified previously unknown promoter sequences within these gene clusters, offering new …
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Streamlining Regulon Identification in Bacteria
… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint … Science Initiative and used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … different environments. He’s been involved in several plant genome projects through the Community Science Program. As a … encourage more plant proposals and provide feedback on pangenome tool development. Maurice is a fungal evolutionary …
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Trent Northen
… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic …
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JGI on the 2021 Highly Cited Researchers List
… team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an …
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Kjiersten Fagnan
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
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