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Pinning Down a Piece of Photosynthesis
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … share. The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting … and efficiently harvest the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was previously known, throws open …
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Accelerating Metagenomics Discoveries with Deep Learning
… biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … to vectorize protein sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and … contigs (inferred chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of …
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JGI User Executive Committee Expands
Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … different environments. He’s been involved in several plant genome projects through the Community Science Program. As a … encourage more plant proposals and provide feedback on pangenome tool development. Maurice is a fungal evolutionary …
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Tanja Woyke Elected to American Academy of Microbiology
… (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for … Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group. She has also served as … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One …
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Ancient Algae Reveal Secrets of Plant Evolution
Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research … Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement Biomedical Research …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and … at the Université des Antilles in Guadeloupe, in 2009. Gros’ research focuses on marine mangrove systems, and he …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … Biological and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support …
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The Surprising Structure of a Shrub Willow Sex Chromosome
Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). …
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