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Supercharging SIP in the Fungal Hyphosphere
… method to the study of a particular fungi, researchers identified novel interactions between bacteria and the fungi. … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … the fungi interacts with them. In this case, scientists identified a wide variety of microbes, including both bacteria …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … potential of this collaboration stating, “We already identified a lot of synergies. To bring together expertise of … will give us the opportunity to advance unique scientific knowledge and address global challenges.”  During the …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of conifer needle microbiomes across six sites spanning a 1000km section of the Rocky Mountains. This represents the … analysis of mobile genetic elements across all of the metagenomes. Learn more about her time at the JGI here . Bennett …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of … This work was supported in part by NIH grants DP2 OD008677 and R01 GM124589, NIH training grant T32 GM066698, and …
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How Maize Makes An Antibiotic Cocktail
… called zealexins. Even though scientists have identified at least 15 zealexins, they suspect there are even … and harnessed gene expression data from these lines to identify genes associated with zealexin synthesis. The … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year … and environmental remediation—all priorities identified by the DOE Office of Biological and Environmental … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … called single nuclei RNA sequencing, the researchers identified different cell types within  M. truncatula root … plant and fungal transcripts,” Serrano said. This team quantified the expression of over 12,000 fungal genes, in …
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Four Researchers Join JGI User Executive Committee
… been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … that support its user community. The breadth of scientific expertise of both the recently elected and continuing … JGI improve its interactions with the broader user and scientific community and consider new initiatives in areas such …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Charting Progress toward Professional Goals
… help them build skills and tools, they gain invaluable scientific and technical experiences.  Genomic data scientist … CalTeach initiative. During their time at the Joint Genome Institute, they interacted with interns from other …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… The JGI offers these solutions to the worldwide scientific community through its  User Programs on a competitive, … address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced … on viruses, Holmes was part of  the initial release the genome sequence for SARS-CoV-2 , back in January of 2020. …
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