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… A software tool  recently described in  Nature Biotechnology  called geNomad identifies and classifies MGEs … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first version of …

… Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … in improving plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm …

… Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … they reconstructed and examined over six hundred bacterial genomes — mainly actinobacteria, as well as proteobacteria, … interact; beyond bacteria, these samples harbored fungal genomes, including a novel Leotiomycetes species and …

… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … The monumental challenge of this multi-institutional, multi-investigator effort was to decode the complex Phytophthora ramorum genome. The JGI generated the organism’s DNA code in tandem …

… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so … collected at each sampling site, were compiled into the Genome Resolved Open Watershed database (GROWdb). The team …

… with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic … conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …

… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … that precisely maps where transcription begins on the genome. This revealed a sweeping cellular response: The … Research program’s efforts in advancing genome-based biotechnology.  Researchers studying Streptomyces species or …

… The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been … predicted functional and metabolic roles across global metagenomes (within IMG).  The Impact The initial analysis …

… data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … were retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is … analysis and annotation of all publicly available genomes in three domains of life.  Using the IMG suite, JGI …

… has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User … Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell …