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A Sorghum Pangenome Opens More Doors to Discovery
… into other crops for biofuels and bioproducts. Historically, work on sorghum has focused on producing high-quality … Science Center. Collaborators benefitted from sequencing resources as part of the Community Science Program of the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Steven Wilson
… Systems Engineering Group lead.   The group is responsible for developing and supporting applications that span the … and our institutional website.   Mr. Wilson brings a user-centered approach, an ability to work with others to … Biopharmaceuticals as an intern, he joined the JGI as an Instrumentation Engineer where he added structure and …
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… to advance foundational science, creating opportunities for the global research community. The U.S. Department of … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  …
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Viruses Reprogram Cells into Different Virocells
… it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … microbes are transformed into virocells that are metabolically and functionally different from uninfected cells. … in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative …
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Nigel Mouncey
… genetics that started with his education and carried forward into his roles as a senior research scientist at … of novel production organisms and fermentation processes for vitamins, insecticides, fungicides, platform chemicals, … and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI Director, Dr. …
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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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You Can Move, But You Can’t Hide
… software tool  recently described in  Nature Biotechnology  called geNomad identifies and classifies MGEs based upon … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … the trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the …
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Tracing the Evolution of Shiitake Mushrooms
… to decay wood were widely conserved across species. Specifically, many species had very similar plant cell wall … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla
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