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… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … in developmental and disease processes in the human genome. In addition to his appointment at the DOE Joint …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …

… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus … microbial world but we also annotated several Phytophthora genomes; this depends on the scientific questions asked and …

… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …

… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic anchors for …

… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most abundant in the …

… almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … they always cluster or could the genes be separated on a genome?  Dan: Oh yeah. It’s biology so anything is possible … then to have secondary metabolism in proximity within the genome so that things can transfer.  Plants are a different …

… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …

… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then you’ll recognize this … the end, then you’ve probably heard me say that the Joint Genome Institute is a “Department of Energy user science …