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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from their studied system results … over 12,000 metagenomes from diverse environments and grouped those with similar microbial communities together. …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and … ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , researchers describe a … with BER missions to provide the fundamental science to support innovations for bioproduction and advance their …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … caught several microbes from known cellulose-degrading groups, the researchers also hooked and were able to … EG is supported by the NIGMS Biotechnology Training Program (NIH 5 T32 GM008349) at the University of …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper understanding of … in both genome content and structure following a genome duplication event that occured some 60 million years ago. …
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JGI & KBase at PAG XXVII
… representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with … Plant Program head Jeremy Schmutz and  KBase Co-PI Bob Cottingham host a  workshop on DOE Biological and Environmental … 6:20 PM Overview and Joint Genome Institute Plant Program Update 6:33 PM Comparative Genomic and Transcriptomic …
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Leo Baumgart
… joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and … at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His …
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JGI-TMF Critical Minerals and Materials Call
… research proposals that integrate genomics with nanoscale science, accelerating discoveries and developing transformative bio-based technologies that address … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and …
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How Maize Makes An Antibiotic Cocktail
… family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a plethora of … called terpenoids, which have a structure belonging to a group of chemicals called terpenes. Terpenes are important in …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are hermaphrodites, expressing both male and female gametes in one individual. But … This work was supported by the NSF Dimensions of Biodiversity Program …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities offered, proposal … recommendations on how the JGI Science Programs can best support the user community. Advise the JGI on other topics as …
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