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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … perspective, involving more multidisciplinary teams. The work also paved the way for a longstanding collaboration …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … tree tracking the evolution of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through … this identification, metabolomics enables functional genome annotation, improves understanding of the role small …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base … in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … and cataloging them in JGI’s fungal portal MycoCosm. … The work conducted by the US Department of Energy Joint Genome …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … number of 8X individuals that had been collected from field work. When viewing the full distribution of switchgrass on a …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … problem: at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … how fungi associate with roots in A. thaliana plants. The work also involved researchers at the French National …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support … Group : a team that develops data science tools for workflow management and novel automations for DNA design, …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) … who consider technical feasibility and readiness to begin work.  During scientific peer review, proposals are … with PIs (including JGI scientists as needed), and the work plan is written into a Statement of Work document. … …
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CSP Large Scale Call
… is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional … instructions via email.   Human or animal disease-related work will NOT be considered under this program. Plant …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … The Science To help better understand how ecosystems work and how healthy they are, a recent data set  outlined … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … (now at Stanford University) collaborated with the JGI. Working together, they found most bacterial genomes from …
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