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… and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The …

Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all known virophage genomes share only four genes in common: major and minor …

… data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, … TBK, Chen I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. …

Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …

… technologies have led to an abundance of microbial genomes becoming available to the global research … a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually … Data Science group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” …

… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in … DNA sequencing can help scientist to recover the genomes of these viruses and associate them with their …

Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …

… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … From these assemblies, complete or near-complete population genomes were recovered—termed “metagenome-assembled genomes” …

Genomes from uncultivated bacteria offers clues to ancestral … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria … Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, and had found they …