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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing … highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale materials … with BER missions to provide the fundamental science to support innovations for bioproduction and advance their …
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Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy … guides are effective. To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs …
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The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … their expertise in developing and managing public viral genomics resources such as analytical tools and data … understand their roles and potential impacts. The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI …
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Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized hundreds of  … at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — the …
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Methane-fed microbial communities enriched from field-grown rice support diverse heterotrophic bacteria
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt … desirable from a biofuels production perspective. By using genomic database alignment tools, researchers searched for TPS genes … This work was supported by the Australian Research Council (grant numbers …
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Learning to Look
… Machine learning approach significantly expands inovirus … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … co-authors and an expert on inoviruses. “The result of this hidden diversity of inoviruses now overhauls our perception …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … only works using subread data, PacBio is working on support to use CCS data as input. Data analysis Q:  What …
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