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Atif Shahab
… Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. … in Laboratory Information Management Systems (LIMS), bioinformatics, and genomics data management. He has worked …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… postdoc at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the …
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Benjamin Cole
… plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … Selected Publications … Software …
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Richard Fox
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Webinar: MycoCosm Tutorial
… 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … While are still working on finalizing the tree and related publication the tree is still in development and not … sequence but deliver a complete package including standard bioinformatics analyses. Average times for different JGI …
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Natural Prodcast Episode 2: The Primer, Part 2
… so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … metabolites, like sponges were a really common source for people to try to find new medicines for a long time. But we know now that most of those pathways …
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MGM Workshop at Fisabio Summer School
… and seminars as well as practical hands-on sessions in bioinformatics and biostatistics. …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever … of Technology he developed a high throughput approach for isolating individual bacterial cells and amplifying … these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate a …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary across the global ocean. … on four research cruises, they dipped their self-closing containers into sea water to sample algal communities along … address some of the most pressing challenges of our time. For more information, please visit  …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. The planet’s microbial diversity … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara generated a list of … They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on …
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