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Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota)
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree … larger and more complete segments. This allows for more accurate and detailed comparative genomic analyses.   The … Impact There are 900 species of eucalyptus. The trees are fast-growing plantation crops that supply wood and fiber for …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … This work was partially supported by awards from US Department of Energy (DOE) Office of Science, Office of Biological and …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … Breakthroughs: Advancing gene regulation mapping Previous methods to identify where transcription factors (TFs) — the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by … functional genome annotation, improves understanding of the role small molecules play in diverse biological … liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational analysis. …
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Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway
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Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … National Laboratory (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project … How To Create an Annotated GenBank File There are several easy-to-use …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
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