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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … all around the world. We work with start-ups and mature companies, as long as the data are not proprietary. In … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to … et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … nitrogen-metabolizing enzymes are abundant, and to which microbes they belong. This study provides further insights … was able to identify enzymes in the soil and who made them. Based on data reported in the April issue of Soil Biology …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the California-Baja … C. californicus in particular, as a model system for venom-microbe interactions. Cone snail venom has a number of …
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Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms … about the microbial communities deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re looking at: the role viral infection may play in other …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … at Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy … Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small … viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … likely to just scratch the surface of what’s out there.  Beyond these 2,000 MAGs extracted from 8,000 metagenomes, …
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Computationally Classifying Fungal Lifestyles
… known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … Genomes Project, which aims to provide a reference genome for each of the fungal families. Researchers had access to … between fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial … genomes that have been sequenced by the JGI though not formally analyzed or published.  The purpose of the program …
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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