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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that feed on … of plant-host and mycorrhizal-fungal interactions. … The project was funded by the U.S. Department of Energy Joint …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … Alison is alive and well and doing very well. She’s a real journalist now. Just not working with me. AARON PURI: No, …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base … 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to … Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're doing with those …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place … Lab), have unveiled PhycoCosm in the Nucleic Acids Research journal. The genome portal reinforces the JGI’s new …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place … Lab), have unveiled PhycoCosm in the Nucleic Acids Research journal. The genome portal reinforces the JGI’s new …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their talks … Todd Anderson currently works to support understanding of plants, microbes and environmental communities that have …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes … The Science A team led by researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … Change’ (SPP 2237), and grant 410739858 in the frame of the project CharMod to K.v.S., as well as RE 1697/16-1 (CharMod) …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … and scope negotiation with the JGI.  Investigators with grants funded by DOE-BER requiring support from the JGI may  … resources for genomic research and sequence-based science.  Projects include de novo generation of genome data, …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding … After successful completion of the human genome project, Professor Dr. Rokhsar ’s team has continued to … on understanding the origin, evolution, and diversity of plants and animals by combining computational genome analysis, …
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