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Kjiersten Fagnan
… with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division. As a postdoc, her research focused on stable and … Informatics Officer provides advice and strategic direction for the overall design and implementation of …
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Axel Visel
… in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received … developed novel tools for large-scale in situ gene expression analysis in multicellular organisms. During his …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct sequence … felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … in environments including hot springs and acid mining sites, traits that might have biotechnological applications. … and giant algal viruses.  The approved proposals started October 1, 2020 and the full list is  available here . They are …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in …
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Four Researchers Join JGI User Executive Committee
… of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, Greg Bonito of Michigan State University, Jonathan Eisen of the University of California, Davis, and …
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like … a lot of action happening in terms of where those binding sites are in the genome — those sequences are moving around, … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They were selected through …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and … as input. Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Leo Baumgart
… San Diego. As the Sequencing Technology Implementation Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new genomic … characterization of transcription factor binding sites and which has been applied to a wide range of JGI user …
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JGI Announces 2025 New Investigator Portfolio
… Flavia Winck Vischi, Jennifer Wisecaver, Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the … circle of researchers whose work aligns with DOE missions .  Below find a list of researchers whose proposals were …
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