Results

Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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A Grass Model to Help Improve Giant Miscanthus
… name suggests giant miscanthus literally towers over most researchers due to its prodigious capability for growth. … at the Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), a Department of Energy (DOE) Bioenergy … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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iPHoP: A Matchmaker for Phages and their Hosts
… like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is … Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… around this structure to facilitate sharing.  Recently, researchers have been able to study both sides of this … date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better understand … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… around this structure to facilitate sharing.  Recently, researchers have been able to study both sides of this … date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better understand … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … speciation events within existing species. Within the JGI’s production pipeline, ANI is used to ascertain the … control within IMG. While ANI is integrated within IMG, ani.jgi.doe.gov serves the current data. … The mission of the …
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Computationally Classifying Fungal Lifestyles
… classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a computer … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . This work was enabled in …
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Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … UK and Lawrence Berkeley National Lab … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single … and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. …
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ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and … analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. …
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