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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … regulation is critical to ensuring genes vital for growth and survival across various environments are …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
Learn more
Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — … metabolites and associated genes are great resources for bioremediation, new agricultural applications or …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … virus sequences vary widely. In a previous effort, an international consortium recommended specific …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship program, …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can … ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights …
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