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Meeting report: International soil virus conference 2024
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Computationally Classifying Fungal Lifestyles
… methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …
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New and Improved: Eucalyptus Reference is Now Accessible
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Glacier ice archives nearly 15,000-year-old microbes and phages
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Plant Program
… by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting … climate and soil conditions around the globe to identify genes to improve our domesticated species.  The program …
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scMicrobe PTA: near complete genomes from single bacterial cells
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing … are estimated to produce 500 million tons of methane a year, which is over half the total global methane … of tons of the carbon dioxide trapped in biomass each year to do so. As such, they are considered to have a …
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Nikos Kyrpides
… Nature Biotechnol . 39:499-509. Harrington et al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through …
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Synthetic Biology Open Language (SBOL) Version 2.2.0
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for … by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — …   ( Subscribe to Genome Insider on  Apple Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … these plant genome sequences also led researchers to identify a gene related to seed dispersal in wild populations for …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … Q:  To what extent is natural soil a limit to identify molecules exchanged between plants and microbiomes during … in the field. By having transcriptomics data across 2 years, as well as a second field trial (which will include a …
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