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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading … novel insights into the diversity and important ecological roles of microeukaryotes in terrestrial ecosystems. …
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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … analytical standards to accurately measure environmental microbiome activity levels.This functional assay lets us …
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A call for standardized classification of metagenome projects
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Plant-Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … terrestrial world. Research Team    … Plant microbiomes hold the amazing ability to influence plant … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … the air, plant rhizosphere, wastewater, and even animal and human (for the first time) gut and taxonomically classified …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … bit of entomology as well. DAN: Right. Yeah. No, yeah, Bill does it all. A lot of people I think-- well, maybe I'm …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … University of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of … Nature Microbiol. 7(9):1419-1430. Ye et al (2022) The role of zinc in the adaptive evolution of polar …
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Functional autonomy of distant-acting human enhancers
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Beyond the census of human gut dwellers
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … areas that require cleanup and long-term monitoring. The DOE has been similarly invested in environmental management, … to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … by a team of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … boundaries by applying AI methodologies to unravel their roles,” Pavlopoulos said. “Consequently, we have amassed an …
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The Earth BioGenome Project 2020: Starting the clock
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