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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … Program — as well as through the Facilities Integrating Collaborations for User Science Program (FICUS) with the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … from Earth’s Microbiomes) catalog, this work results from a collaboration involving more than 200 scientists, researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have … a number of notable achievements that showcase our collaborations and capabilities to enable great science that … In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, … within IMG. While ANI is integrated within IMG, ani.jgi.doe.gov serves the current data. … The mission of the … publicly available genome and metagenome datasets. IMG is a collaboration between the JGI and the Computational …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to … environmental challenges, such as improving soil health, carbon sequestration and bioeconomy applications. The …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and … This project has turned out to be an international collaboration, with some artistic endeavors along the way. …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … river microbiome datasets are also available through the DOE Systems Biology Knowledgebase, allowing researchers to … not only how researchers can successfully partner with DOE user facilities and resources on such large-scale …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … play a critical role in sequestering carbon and mitigating greenhouse gas emissions, and understanding how to improve …
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An amoeba and a cyanobacterium walk into a bar...
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … The Genomics Arms Race Ari Patrinos , Former Director of DOE’s Office of Biological and Environmental Research “There … and it is still seen today as a massive feat in science and collaboration. In closing his presentation, Patrinos shared …
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