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… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein … I wasn’t familiar with in terms of machine learning and new software I’d never been using before. I also wanted to …

… reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ type-strain deposits. All of these genome sequences and the tools to compare them are available on the JGI’s Integrated … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In …

… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, …

… at the DOE Joint Genome Institute, a DOE Office of Science User Facility, revealed the largest number of TPS genes of … from a biofuels production perspective. By using genomic database alignment tools, researchers searched for TPS genes in C. citriodora . … Training Program Scholarship. Sequencing and assembly data carried out by EMBRAPA as part of the  Corymbia  genome …

… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about … thereby accelerating critical insights for the JGI User community. …

… other related organisms, requires using more specialized tools, skills and protocols,” explained Hiroshi Otani, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a member of  its Secondary … user-available API’s offer a space to not just store data, but for the community to discuss those data and make …

… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the …

… Lead position in 2009 and assumed the Deputy Director of User Program position in 2021. In addition to her JGI … Merced's School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed … the Microbial Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's areas …

… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research achievements that support open data practices, development of standards and processes for …

… genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the … Fungal Dataset … Plant Datasets …

… before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You … air, email us at [email protected] .  And because we’re a User Facility, if you’re interested in partnering with us, …