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The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants  
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … that play key roles in global biogeochemical cycles remains unexplored and uncultivated. Developing a more targeted …
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Jeremy Schmutz
Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies … kingdom. Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … phyla across virtually every ecosystem.” By significantly expanding the known diversity of these viruses, genomic …
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts … across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … alumni, and other staff gathered at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as … and I live these values by being able to pass along my knowledge to them as best as possible in a safe environment” …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … on review panels for the JGI Community Science Program (CSP) proposals. He  brings experience representative of the … has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and brings …
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Webinars on Offerings & Capabilities
Below are a list of webinars that can help you through the submission process … Research shows researchers how to tap into the capabilities of the Advanced Photon Source when applying to the FICUS …
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using … Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … their expertise in developing and managing public viral genomics resources such as analytical tools and data … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual … of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s … to work through the project. They faced something of a genomic arms race as they recognized the private industry’s …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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