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Alabama A&M Interns Access An Abundance of Knowledge
… Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … with a grass plant that’s similar to wheat and rice called Brachypodium distachyon. LaMonika Dent : We have been … experience in molecular biology and plant functional genomics, because this work is essential for improving crop …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar … Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. …
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Nikos Kyrpides
… microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. He did his postdoctoral … global metagenomics. Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and …
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Streamlining Regulon Identification in Bacteria
… a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy … yielded through RIViT-seq expand the known transcriptional regulatory network in bacteria, enabling the discovery of regulatory cascades as well as crosstalk between sigma …
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Natural Prodcast Episode 3: The Primer, Part 3
… of biology. You know, I’ve personally been able to work in genomics, in protein structure, in synthetic biology, …
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How Maize Makes An Antibiotic Cocktail
… Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and … a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a fellowships provided …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… their expertise in developing and managing public viral genomics resources such as analytical tools and data … developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to … for one field of research can be harnessed elsewhere. In a  2019 paper , the team applied computational methods and …
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Help from Citrus’ Bitter, Hardier Cousin
… Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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DOE JGI Interns Share Their Summer Experiences
… second year of the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program, Susannah … worked with Zhong Wang while Karen Tolentino worked with Brachypodium researcher John Vogel. Other students hosted …
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New and Improved: Eucalyptus Reference is Now Accessible
… with GENESPACE, a computational tool for comparative genomics.   With a more robust reference genome, researchers …
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The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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