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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been … of Wisconsin-Madison, for over 20 years in order to better understand how the freshwater ecosystem works. When …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … these complex symbioses between organisms feeds into a better understanding of nutrient cycling across the planet. …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga … feedstocks and industrial precursors — as well as to better enable the mining of critical minerals and materials. … (9203). RJC was supported for his work on  Auxenochlorella genome sequencing and assembly in Berkeley, in part, through …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost.
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Metagenome-assembled bacterial genomes from benthic microbial mats in ice-covered Lake Vanda, Antarctica
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Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… was green millet (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and …
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JGI announces 2025 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions allows … crops through transcriptional network mapping, developing microbial systems to convert renewable feedstocks into … program, these projects integrate cutting-edge genomic data with predictive modeling and bioengineering to advance U.S. …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network … to assemble, for the first time these large environmental  microbial data sets for JGI users, which include projects … multi-terabyte datasets assembled for the first time with  MetaHipMer , taking advantage of scalable parallel …
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