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Leo Baumgart
… sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. … cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional genomics capabilities through … Lax, Carlos, Stephen J. Mondo, José F. Martínez, Anna Muszewska, Leo A. Baumgart, José A. Pérez-Ruiz, Pablo …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … yet abundant subsurface organisms was  recently reported in Nature Communications. The work was co-led by … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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Scaling Up Existing Skill Sets
… experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has … as JGI/LBNL. What is/has been one of your favorite things about your JGI internship? My most favorite parts of the …
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Partnerships: Adopt-A-Genome
… provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the … The purpose of the program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose … JGI products and services while nurturing a fresh cohort of users Reach the next generation of genome scientists and …
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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based techniques, the … diverse biological and environmental samples in support of user science.  Capabilities offered by the platform are a … root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, … and in flowering plant lineages.   With the information about  Marchantia -specific innovations and adaptations, …
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Tracking the Origins of Methane-Producing Microbes
… the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … on the global carbon cycle. All methanogenic archaea use one of three pathways for methanogenesis: … Institute (JGI), a DOE Office of Science user facility, report the discovery of a novel archaeum from a hot spring …
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Boosting Small Molecule Production in Super “Soup”
… for maintenance to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by … and so one of the things that I think is so special about this collaboration is that we’re doing work in yeast, … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … .  The latest article, published January 27, is about engineering plants and their microbiomes for more … Sanger Institute.” Last year for the column, Woyke wrote about the research field’s move toward characterizing the …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… scientists, the culmination of their work into a written report that is published in a scientific journal is the … ultimate achievement. To get to this point requires rigorous research, written skill, above all else, determination. … Grigoriev at the JGI strongly influenced her perspective about what it means to be a scientist. “To see how team …
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Boosting Small Molecule Production in Super “Soup”
… for maintenance to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by … and so one of the things that I think is so special about this collaboration is that we’re doing work in yeast, … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
Learn more
Mining Metagenomes for Cas Proteins
… the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short Palindromic Repeats … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office …
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