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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … genes from isolates, there isn’t much scientists can tell about its function or its origin. As a result, these genes … it is very hard to have 100 sequences from different locations or habitats that align very well, randomly,” …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … author Avinash Sreedasyam, a HudsonAlpha senior scientist, about the project. The story is reposted here in modified … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, …
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A Sorghum Pangenome Opens More Doors to Discovery
… development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for … how we think of things that we thought we knew everything about,” said Lovell.  In future work, a pangenome offers … — including understanding of traits we know little about.  Researchers from Colorado State University, DIRAD, …
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Leo Baumgart
… sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. … cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional genomics capabilities through … Lax, Carlos, Stephen J. Mondo, José F. Martínez, Anna Muszewska, Leo A. Baumgart, José A. Pérez-Ruiz, Pablo …
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DOE JGI Interns Share Their Summer Experiences
… part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two … groups, respectively. Each of the interns spoke briefly about their time at the JGI at … Merced Genomics Distinguished Graduate Internship Program, Susannah Tringe and Axel Visel hosted Imelda Forteza and …
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JGI Announces 2025 New Investigator Portfolio
… novel research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with a widening circle of … November 2025 review. You can also find more information about the JGI’s  various proposal calls here. …
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Frederik Schulz
… leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs … biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … ocean could fix less carbon when infected. Little is known about virus-infected microbial cells that are transformed … viruses control them through infection, but little is known about the impacts of these infections on ecosystem …
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JGI Hosts GPU Hackathon in May
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life … either jumpstart acceleration or optimize their code on GPUs. While the  OLCF is organizing nearly a dozen hackathons … to the Team Proposal tab to submit. For more information about the 2019 GPU Hackathons, go to:  …
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JGI Announces 2026 New Investigator Portfolio
… Sherbo, Jennifer E. Smith, Chin Chin Too, Brooke Weigel, Susanne Wilken, Jing Yuan, and Brittany N. Zepernick.    Each … novel research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part … the October 2026 review. You can also find more information about the JGI’s  various proposal calls here. …
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JGI announces first round of 2023 New Investigator awardees
… with DOE missions and from PIs who have not led any previously-accepted proposals —  through the  New Investigator … be conducted in March. You can also find  more information about the scientists and their proposals here .         … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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