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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related to her thesis on cone …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in Bioengineering, … imaging for in situ kinetic histochemistry. Sci Rep. 2013;3: 1656. …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … in part through JGI’s Community Science Program through a proposal akin to the Encyclopedia of DNA Elements (ENCODE) … integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  Proceedings of the …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of … of Prokaryotes. PLoS Genet 122:e1005854. Nord Et Al. 2013. Rapid and Pervasive Turnover of Mammalian Enhancer …
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Complete genome sequence of Leptotrichia buccalis type strain (C-1013-bT)
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial communities — from … 18 scientists, eight have never been involved in a JGI proposal. Three are previous collaborators, though have …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … A record number of primary users — 2,456 — had active proposals with us, along with more than 15,000 secondary … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep … This work received funding by the Alfred P. Sloan foundation (grant number …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in … quantitative analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022. …
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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