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Effects of Polar Light Cycle on Microbial Food Web
… with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Progress Reports: 2002–2020
Click the cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY19 Progress …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, … in understanding how, when and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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A Natural Mechanism Can Turbocharge Viral Evolution
… how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome workshop held during the June 2022 CROPS Conference … at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful …
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Uri Neri
… computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for viral … messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … is famous for its work sequencing human and environmental genomes. But we now have these DNA synthesis capabilities …
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I-Min (Amy) Chen
… one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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IMG/VR
… the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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When “The Blob” Made It Hotter Under the Water
… marine microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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