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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a … multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria did; contemporaries Melainabacteria and Sericytochromatia, members of the same clade …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … This work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … University and Uwe Ohler at   Humboldt Universität zu Berlin   has developed an atlas that maps gene expression … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea … This work received funding by the Alfred P. Sloan foundation (grant number … and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life Sequencing call 2018, …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This work was supported by the Plant-Microbe Interfaces program at the Oak Ridge National Laboratory …
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