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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the next … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department of …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful …
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Uri Neri
… computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the … and logistics activities.  He returned to the Joint Genome Institute after serving as the Chief Operating …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the … to further develop a more diverse and inclusive pool of talent for career opportunities at JGI and Berkeley Lab. …
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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( Panicum … potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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