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Team Science Reveals Important Protein in Poplar
… Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (BNL). The Fe deprivation RNA-seq (proposal:  10.46936/10.25585/60001386 ) was conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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When “The Blob” Made It Hotter Under the Water
… were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Research (SCOR), the US Department of Energy (DOE) Joint Genome Institute, an Office of Science User Facility, … of the U.S. Department of Energy under Contract DE-AC02- 05CH11231, the G. Unger Vetlesen and Ambrose Monell …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on … that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me and learning …
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Forming Scientific Connections and Building Community
… This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Mentors: Jessen Bredeson & Albert Wu Project: “ Pangenome de Bruijn Graph Simplification ” Peter Nguyen : … Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting …
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an …
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Effects of Polar Light Cycle on Microbial Food Web
… Antarctica, was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Viruses Reprogram Cells into Different Virocells
… between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (FICUS) initiative through an award to MBD and MBS (#2582) and used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander Probst, Stephan … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of California (UC) Merced scientists conducted a shotgun metagenomic survey of conifer needle microbiomes across six …
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How Maize Makes An Antibiotic Cocktail
… zealexins. Even though scientists have identified at least 15 zealexins, they suspect there are even more to find. … feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. Moreover, zealexin biosynthetic enzymes would … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme … enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, …
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