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Team Science Reveals Important Protein in Poplar
… Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (BNL). The Fe deprivation RNA-seq (proposal:  10.46936/10.25585/60001386 ) was conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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When “The Blob” Made It Hotter Under the Water
… such as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third … which go from coastal to open ocean waters. Between 2010 and 2016, Hallam and his colleagues collected more than … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me …
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Forming Scientific Connections and Building Community
… This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Mentors: Jessen Bredeson & Albert Wu Project: “ Pangenome de Bruijn Graph Simplification ” Peter Nguyen : … Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting …
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M …
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Effects of Polar Light Cycle on Microbial Food Web
… were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Viruses Reprogram Cells into Different Virocells
… cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. … the ocean, viruses outnumber surface microbes 10 to 1, and 20% to 40% of the microbes are infected at any given time. … between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation detection currently only …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated … Understanding (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from UDE familiarized themselves with the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … summer project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in …
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How Maize Makes An Antibiotic Cocktail
… synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … 1758976 to E.S. and P.Z.) for diterpenoids, by a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a fellowships provided by …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified …
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