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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome … University of Minnesota to establish the Natural Products Genomics Resource Center. To help enable the discovery of …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of regulon identification by in vitro … This work was supported by the U.S. Department of Energy Office of Science under Contract No. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … The phyllosphere, which is known as the aerial surface of plants, is a comparatively understudied area of forest ecosystems as past … ) conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common … by a consortium involving researchers from the University of California (UC), Berkeley, UC Agriculture and Natural …
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … genomes than many bacteria. Until recently, understanding of giant viruses came primarily from sampling an …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … , is recognized as a mutualist, where both species of organism benefit from association, but was predicted to … researchers also generated the first transcriptomic dataset of sexual reproduction in early fungi and discovered genes …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … surface where algae grow. Armed with a better understanding of the alga’s stress resistance and ability to adapt to … to better manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key … aquatic environments. The Impact A deeper understanding of how plants adapted to terrestrial life paves the way for …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to …
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