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JGI Workshop at SIMB NP Meeting
… still a large number of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of the available datasets. Efforts to recover MAGs by extracting data directly from environmental samples over …
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Eelgrass Proves to Be Much Younger Than We Thought
… form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the ancestor to eelgrass underwent a whole genome duplication event, doubling all of its chromosomes.  … at a predictable rate, enabling researchers to use the genome assembly to calibrate their genetic clock.  Various …
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A Step Toward Controlling Soybean Rust
… Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to …
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DOE Metrics
… counted once, even though an individual may have several projects/roles. Sequencing Quarter Total Bases (Trillions) … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours* Goal  Actual Total*   Actual % …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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Refining the Process of Identifying Algae Biotechnology Candidates
… cook knows, recipes can be refined for best results, often by starting with identifying the right ingredients. … multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI Announces 2023 Community Science Program Awardees
… Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … , JGI’s deputy of User Programs. “The proposed research by these PIs will address a broad diversity of important … CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of Biological and …
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Fishing for Novel Cellulose Degraders
… specific catches. A similar technique has been developed by researchers led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a microbial community from geothermal hot springs, they uncovered a novel cellulose-degrading bacterium typically …
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Benjamin Cole
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their growth program, and on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on …
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Tracking the Origins of Methane-Producing Microbes
… Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone National Park’s … samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of them archaea. The Quake lab had previously …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … oil plume from Deepwater Horizon oil spill led to a draft genome of the first deep-sea, oil-eating bacterium from a … researchers sequenced and assembled the first complete genome of an uncultured symbiont. The single cell was …
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