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Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Long-term warming modulates diversity, vertical structuring of microbial communities, and sulfate reduction in coastal Baltic Sea sediments
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The Surprising Structure of a Shrub Willow Sex Chromosome
… first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … the study’s international team, which included scientists from Oak Ridge National Laboratory and the U.S. Department … located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community Science …
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Promoting the Power of Viral Metagenomics
… Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront … DNA or RNA contained in a sample that has been collected from any kind of environment you can think of – animal … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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Steven Wilson
… project and work order creation and management, automated sequence quality control and automation of microbial/metagenomic assemblies, portals that make data … Lead Data Warehouse and Software Quality Assurance teams from April 2012 to 2018.        …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in … a template — integrative analysis of multiple omics data from various environments — that JGI users can leverage to … The team also identified previously unknown promoter sequences within these gene clusters, offering new …
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How Filamentous Fungi Sense Food
… break down the components of plant cell walls, which range from simple to complex carbohydrates, and then convert them … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published … as they responded to available carbon sources, which ranged from simple sugars to plant biomass. One of these techniques …
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Draft Genome Sequences of Chlamydiales Bacterium STE3 and Neochlamydia sp. Strain AcF84, Endosymbionts of Acanthamoeba spp.
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The Genome Sequence of Psychrobacter arcticus 273-4, a Psychroactive Siberian Permafrost Bacterium, Reveals Mechanisms for Adaptation to Low-Temperature Growth▿ †
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Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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