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JGIota: The Algae Nicknamed ‘Chlamy’
… works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other organisms – …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about … revealed nearly identical binding sites for proteins from grasses and trees that diverged 150 million years ago, …
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Extracting the Secrets of Secondary Metabolites
… Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … CRAGE (Chassis-independent Recombinase-Assisted Genome Engineering) is a technique researchers can use to … users of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … engineering system that allows scientists to conduct genome-wide screens and explore biosynthetic pathway. Thus …
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A User-Centered Approach to Accessing JGI Data
… metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. Eventually, he added, the Genome Portal will be retired once the same features are … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis … (INRAE) and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Yasuo Yoshikuni
… production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating …
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Mike Sneddon
… in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … PNAS 113 (28), E4069-E4078 Bendall, M.L. et al. 2016. Genome-wide selective sweeps and gene-specific sweeps in …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology … al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology 37, 29–37. Berg et …
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Integrating Experimentation with Data
… $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular …
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