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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … that precisely maps where transcription begins on the genome. This revealed a sweeping cellular response: The … and Environmental Research program’s efforts in advancing genome-based biotechnology.  Researchers studying …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy … project was supported by a grant from Santa Barbara Cottage Hospital and the University of California, Santa …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full …
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How Filamentous Fungi Sense Food
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided … US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program grant (CSP 982), …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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Soil virus offers insight into maintaining microorganisms
… data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, … domains of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down …
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Streamlining Regulon Identification in Bacteria
… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell …
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Fungus Fuels Tree Growth
… partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team … for the DOE. The work conducted by the DOE Joint Genome Institute, a DOE Office of Science User Facility, is …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the …
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Supporting Global Research into Actinomycetes
… a scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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