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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Edward Lu and mentor Miguel Romero Sean Saki and mentors  Zhong Wang and Bryce Foster Sivagunalan Thamilarasan and mentors Zhong Wang and Bryce Foster Feng Yu and mentors Zhong Wang and Bryce Foster Irina Birskis Barros and mentors …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the … a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  … to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a …
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Soil virus offers insight into maintaining microorganisms
… the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The crystal structures were determined at the Stanford Synchrotron Radiation Lightsource (SSRL). SSRL is a National User …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … to the real-time chat during Ray’s All-Hands tribute wrote, “Thanks for all you’ve done for users around the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … of biodiversity, they used five universally conserved, protein-coding marker genes on nearly 2 million genomes, …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the … in various locations.  One group investigated changes in protein sequences, while others analyzed single point …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … time, they noted that the F. cylindrus genome encoded more proteins requiring zinc than non-polar algae. They …
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