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Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … “JGI is one of the largest producers of environmental genomics data and has a strong reputation in the community,” …

DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user … in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program. …

… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …

… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in …

… the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … second year of the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program, Susannah … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with …

When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in learning … biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …

April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s … workforce.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

Over the course of eight weeks this past summer, 10 students from UC Merced … skills as well as build their network in the field of genomics and scientific research. The topics students worked … summer. The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring students to embark on a …

Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, … their outcomes.” The annual CSP call is focused on large-scale genomic science projects relevant to the DOE’s Office … calls including our New Investigator and Functional Genomics calls, here on our website . See below for the full …

JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …

… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …