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Tracking the Origins of Methane-Producing Microbes
… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan Zuckerberg … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and gene expression. Sailing from pole to pole on four research cruises, they dipped their self-closing containers …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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The Power of One, Amplified
… cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number … a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited speakers shared how research infrastructure – DNA sequencing, synthesis, … address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced …
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Virus Discoveries that Keep Getting Bigger
… viruses. The Science In the last thirty years, in environments all over the world, scientists have discovered … Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of … isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used culture-independent approaches to gain …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … entailing the function of more than a dozen enzymes. But researchers have now revealed that just a handful of enzymes … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce … they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, Lawrence is now a postdoctoral researcher at the Oak Ridge National Laboratory (ORNL), …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … remain silent under standard laboratory conditions. Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … This work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … structures, as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and …
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