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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of …
Learn more
Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … acquired the ability to produce their own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work … break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … genomic information and ecosystems. These curated data are accessible on JGI data portals including the Integrated … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their growth program, and on how plants … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of archaeal …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … to break through, finally resorting to explosives to succeed. Altiarchaea, like the Hornburg, have a history of … This work received funding by the Alfred P. Sloan foundation (grant number G-2017-9955), the …
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Trent Northen
… Dr. Northen is currently a Senior Staff Scientist at Berkeley Lab. Since joining … Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … emissions are a massive factor driving climate change. According to the Environmental Protection Agency , methane … has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … for Ocean Sciences described a novel technique to access high-quality genomic information using minute … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … focused around how to best work together to achieve great success. “For the most difficult challenges, no one agency has …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … in the global  carbon cycle . As decayers, Lentinula fungi access carbon previously locked away in wood, converting it … This research was supported by the NSF awards DEB- 1456588 to D.H. …
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