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… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more …

… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous … to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The microbes …

… in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists … J., Sneddon, M., and Yang, X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT … Academy of Sciences of the United States of America 109(3), 805–810 (2012).  Sneddon, MW, Faeder, JR, and …

… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of …

… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have cited that …

… production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating … R&D100 Award finalist 2019 SIMB Young Investigator Award 2013 …

… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest … “learned” to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced …

… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … switchgrass gardens to track crop productivity across 1,100 miles and eight states. In 2021, using switchgrass … In a follow-up study , researchers focused on two types of naturally occurring switchgrass, those with 4 copies of the …