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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC … in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science … moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … The work conducted by the U.S. Department of Energy Joint Genome Institute was supported by the Office of Science of …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … For the portion of the work conducted by the Joint Genome Institute and the Joint BioEnergy Institute, support …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … P. virgatum on Phytozome … Plant Dataset …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Trent Northen
… Dr. Northen is currently a Senior Staff Scientist at Berkeley Lab. Since joining … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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